Board Thread:Spoilers!/@comment-8345449-20140508142252/@comment-24674051-20140508201032

You know, two questions still remain.

1. How did Hook know where to find Emma in NY?

2. Where the bloody .... is the Jolly Roger?

I think I know the answer to both those questsions. When Past Hook and Present Hook meet up, the Hook from the past is given instructions on how to find Emma (after he is knocked out) and dumped on the shores of Manhattan, while the Future Hook and Emma commandeer the Jolly Roger to finish their return to StoryBrooke.

I think this also explains his whole broodiness during the whole Oz Arc.